About
I am a PhD student in the van Nimwegen lab at the Biozentrum, where I develop Bayesian methods for the analysis of single-cell RNA-seq (scRNA-seq) datasets. My current research focuses on inferring gene regulatory networks from high-throughput omics data (## add link here). In addition, I have worked on benchmarking computational tools to help establish best practices for omics data analysis (## add link here). To learn more about our approach to scRNA-seq analysis, you can read our tutorial: [insert link here]. Broadly, I am interested in gene regulation and in developing computational methods for the analysis of high throughput and high dimensional biological datasets.
In another life I spent a couple of years analysing single cell and spatial transcriptomics datasets (## add link 1 and 2.) in neuroscience labs in EPFL and UNIL.
You can read about some of the topics that I use in my research or that piqued my interest in the Notes section.
Experience
2023 – PhD Student, Biozentrum, University of Basel
2018 – 23 Computational Biologist - 2021 – 23: UNIL, Lausanne - 2019 – 21: Remanalytics, Lausanne - 2018 – 19: La Manno Lab, Lausanne
Education
2018 – 20 MSc Bioengineering, EPFL
2016 – 17 MTech Chemical Engineering, IIT Delhi
2012 – 16 BTech Chemical Engineering, IIT Delhi
Publications
Specialized astrocytes mediate glutamatergic gliotransmission in the CNS
R De Ceglia, A Ledonne, DG Litvin, BL Lind, G Carriero, EC Latagliata, A Ranjak, et al.
Nature, 622 (7981), 120-129 (2023) — DOISpatial tissue profiling by imaging-free molecular tomography
HH Schede, CG Schneider, J Stergiadou, LE Borm, A Ranjak, et al.
Nature Biotechnology, 39 (8), 968-977 (2021) — DOI